You will find it is very different baking with whole wheat flour than with white flour, especially when it comes to bread.
Options:
-add a little bit of fennel into the dough when kneading. It adds a wonderful flavour and is also good for your digestion. If you love fennel, use up to 1/4 cup seeds, if you're not used to the flavour use only a TBS or so.
-don't be afraid to experiment! You can also add ground flax, sunflower seeds, pumpkin seeds etc to the bread
-I use whole wheat flour in everything I bake-including non-yeast things like muffins, cookies, pancakes. I sometimes mix in just a handful of unbleached white flour when I am feeling a bit more conventional, but its not even necessary to produce tasty results!
Tips:
Proofing yeast:
Proofing yeast is a quick and easy way of making sure your yeast is still active. This way you don't have to go through all the trouble of getting your bread made, just to find out the yeast didn't rise your bread :(
All you do is measure out the yeast and mix it with the water called for in the recipe. The water should feel barely warm or lukewarm to the touch. Add just a pinch of sugar to give the yeast something to munch on.
Let the yeast and water sit for a few minutes. First, the water will dissolve the dry coating around the granules of yeast, releasing the active yeast inside. The active yeast will go to work on the sugar and a bubbly foam will start to form on the surface. This foam is proof that the yeast is active, and once you see it, you can add the yeast to your bread dough.
I hope to one day make a tutorial with photos and info for making whole wheat bread. Since I myself am not that experienced yet I felt like other more experienced people might have more to say on the subject! So for now, please peruse the following links- I found them quite enlightening.Here is a website that answers some FAQ on whole wheat bread baking
This is a very helpful tutorial complete with a recipe, videos and photos on making whole wheat bread by hand
Good luck!